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Knowledge base of selected articles, books, software tools and workflows in the field of Bioinformatics and Computational Biology.
Genomics
Genome assembly
Gene prediction
Alignment
pairwise
multiple
whole-genome
Homologous sequences
homology inference
orthology inference
lateral gene transfer (xenology)
Transposable elements
Ultraconserved non-coding elements
Tandem repeats
prediction of imperfect tandem repeats
alignment of sequences with tandem repeats
Genome synteny
Phylogeny
reconstruction
phylogenetic discord
Natural selection
in protein-coding genes
in non-coding data
Recombination
Protein
function prediction
function enrichment analysis
domain architecture
structure prediction
protein-protein interaction
Genome-wide association studies (GWAS) and disease
microRNA and disease
Omics
Transcriptomics
Proteomics
Metagenomics
Metabolomics
Epigenomics
Lipidomics
Genetical genomics (xQTL)
Genomics medicine
Next-generation data
RNAseq
ChipSeq
exome
mass spectrometry
environmental samples
ribosomal occupancy
chromatin
methyl-DNA immunoprecipitation
tandem affinity purification (TAP)
yeast 2-hybrid (Y2H)
[data standardisation]
[big data solutions]
[heterogeneous data solution]
[uncertainty treatment]
["bad" sample detection]
Genomics / Tandem repeats / alignment of sequences with tandem repeats
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ProGraphMSA
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